pyOpenSci Open Peer Review & Accepted Packages

The scientific Python packages below have been accepted into the pyOpenSci ecosystem through our open peer review process.

Explore our accepted scientific Python open source packages

To date, 39 packages have been accepted into the pyOpenSci ecosystem. Click here to check out packages that are currently under review.

Community Partners

To view packages affiliated with our partner communities that are a part of ourpeer review partnership program, click on a community link below. Learn more about our community partnerships here.

All Packages - Search and filters

Below you can search and filter all of our packages.

QuadratiK

Giovanni Saraceno

QuadratiK includes test for multivariate normality, test for uniformity on the sphere, non-parametric two- and k-sample tests, random generation of points from the Poisson kernel-based density and clustering algorithm for spherical data.

sourmash

C. Titus Brown, Luiz Irber, Tessa Pierce Ward

sourmash is a command line tool and Python library for sketching collections of DNA, RNA, and amino acid k-mers for biological sequence search, comparison, and analysis.

rdata

Carlos Ramos Carreño

Read R datasets from Python.

THzTools

J. Steven Dodge

Stingray

Daniela Huppenkothen, Guglielmo Mastroserio, John Swinbank, matteolucchini1

A spectral-timing software package for astrophysical X-ray (and other) data

pooltool

Evan Kiefl

Pooltool is a general purpose billiards simulator crafted specifically for science and engineering.

harmonize-wq

Justin Bousquin

Standardize, clean, and wrangle Water Quality Portal data into more analytic-ready formats

automata

Eliot Robson, Caleb Evans

A Python library for simulating finite automata, pushdown automata, and Turing machines.

martini

Kyle Oman

MARTINI is a modular package for the creation of synthetic resolved HI line observations (data cubes) of smoothed-particle hydrodynamics simulations of galaxies.

SLEPLET

Patrick J. Roddy

Slepian Scale-Discretised Wavelets in Python

ZodiPy

Metin San, Duncan Watts, Daniel Herman

Zodiacal emission simulations in timestreams or HEALPix for solar system observers.

xnemogcm

Romain Caneill

Interface to open NEMO global circulation model output dataset with xarray and create a xgcm grid.

EOmaps

Raphael Quast

EOmaps is a python package to visualize, analyze and compare geographical datasets.

Sciform

Justin Gerber

A package for converting python numbers (floats, Decimals) into scientific-formatted strings more suitable for reading and presentation.

ncompare

Daniel Kaufman

ncompare compares two netCDF files at the command line, by generating a report of the matching and non-matching groups, variables, and attributes.

sunpy

Steven Christe, David Pérez-Suárez, Jack Ireland, Albert Y. Shih, Stuart Mumford, Nabil Freij, David Stansby, DanRyanIrish, Will Barnes, Conor MacBride, Alasdair Wilson, Laura Hayes, Vishnunarayan K I

Python for Solar Physics

biocypher

Sebastian Lobentanzer

framework for creating biomedical knowledge graphs

astartes

Kevin Spiekermann, Himaghna Bhattacharjee

Better Data Splits for Machine Learning

XGI

Nicholas Landry, Leo Torres, Maxime Lucas, Iacopo Iacopini, Giovanni Petri, Alice Schwarze, Thomas Robiglio, Alice Patania

XGI is a Python package for higher-order networks.

cardsort

Katharina Kloppenborg

A python package to analyse data from open card sorting tasks

Python-graphblas

Erik Welch, Jim Kitchen, Sultan Orazbayev

Python library for GraphBLAS: high-performance sparse linear algebra for scalable graph analytics

bibat

Teddy Groves

An interactive template for Bayesian statistical analysis projects

taxpasta

Moritz E. Beber, Sofia Stamouli, James A. Fellows Yates

TAXonomic Profile Aggregation and STAndardisation

afscgap

A Samuel Pottinger, Giulia Zarpellon

Community contributed Python-based tools for working with public bottom trawl surveys data from the NOAA Alaska Fisheries Science Center Groundfish Assessment Program (NOAA AFSC GAP).