pyOpenSci Open Peer Review & Accepted Packages

The Python packages below have been accepted into the pyOpenSci ecosystem through our open software peer review process.

Explore our accepted open source Python packages

To date, 45 packages have been accepted by pyOpenSci through our open peer review process. You can check out the packages that are currently under review in our GitHub submission repository.

Click here to learn more about the process for submitting a package to pyOpenSci.

Community Partners

To view packages affiliated with our partner communities that are a part of ourpeer review partnership program, click on a community link below. Learn more about our community partnerships here.

Accepted pyOpenSci packages

MontePy

Micah Gale, Travis L.

MontePy is a python library for reading, editing, and writing MCNP input files.

PetroFit

Robel Geda, Steve Crawford

The PetroFit Project is an open-source effort to develop end-to-end tools for making accurate photometric measurements, estimating morphological properties, and fitting 2D models to galaxy images.

PyPartMC

Zach D'Aquino, Jeffrey Curtis, Nicole Riemer, Matthew West

Python interface to PartMC aerosol-dynamics Monte-Carlo simulation package

astrodata

Teal, Chris Simpson, jehturner

Common interface for astronomical data products.

plot_phylo

Katy Brown

A Python package to plot a phylogenetic tree on an existing Matplotlib axis.

Great Tables

Richard Iannone, Michael Chow

Make awesome display tables using Python.

sourmash

C. Titus Brown, Luiz Irber, Tessa Pierce Ward

sourmash is a command line tool and Python library for sketching collections of DNA, RNA, and amino acid k-mers for biological sequence search, comparison, and analysis.

rdata

Carlos Ramos Carreño

Read R datasets from Python.

QuadratiK

Raktim Mukhopadhyay, Giovanni Saraceno

QuadratiK includes test for multivariate normality, test for uniformity on the sphere, non-parametric two- and k-sample tests, random generation of points from the Poisson kernel-based density and clustering algorithm for spherical data.

THzTools

J. Steven Dodge

Data analysis software tools for terahertz time-domain spectroscopy (THz-TDS)

Stingray

Daniela Huppenkothen, Guglielmo Mastroserio, John Swinbank, matteolucchini1

A spectral-timing software package for astrophysical X-ray (and other) data

pooltool

Evan Kiefl

Pooltool is a general purpose billiards simulator crafted specifically for science and engineering.

harmonize-wq

Justin Bousquin

Standardize, clean, and wrangle Water Quality Portal data into more analytic-ready formats

automata

Eliot Robson, Caleb Evans

A Python library for simulating finite automata, pushdown automata, and Turing machines.

martini

Kyle Oman

MARTINI is a modular package for the creation of synthetic resolved HI line observations (data cubes) of smoothed-particle hydrodynamics simulations of galaxies.

SLEPLET

Patrick J. Roddy

Slepian Scale-Discretised Wavelets in Python

ZodiPy

Metin San, Duncan Watts, Daniel Herman

Zodiacal emission simulations in timestreams or HEALPix for solar system observers.

xnemogcm

Romain Caneill

Interface to open NEMO global circulation model output dataset with xarray and create a xgcm grid.

EOmaps

Raphael Quast

EOmaps is a python package to visualize, analyze and compare geographical datasets.

Sciform

Justin Gerber

A package for converting python numbers (floats, Decimals) into scientific-formatted strings more suitable for reading and presentation.

ncompare

Daniel Kaufman

ncompare compares two netCDF files at the command line, by generating a report of the matching and non-matching groups, variables, and attributes.

sunpy

Steven Christe, David Pérez-Suárez, Jack Ireland, Albert Y. Shih, Stuart Mumford, Nabil Freij, David Stansby, DanRyanIrish, Will Barnes, Conor MacBride, Alasdair Wilson, Laura Hayes, Vishnunarayan K I

Python for Solar Physics

biocypher

Sebastian Lobentanzer

framework for creating biomedical knowledge graphs

astartes

Kevin Spiekermann, Himaghna Bhattacharjee

Better Data Splits for Machine Learning

XGI

Nicholas Landry, Leo Torres, Maxime Lucas, Iacopo Iacopini, Giovanni Petri, Alice Schwarze, Thomas Robiglio, Alice Patania

XGI is a Python package for higher-order networks.

cardsort

Katharina Kloppenborg

A python package to analyse data from open card sorting tasks

Python-graphblas

Erik Welch, Jim Kitchen, Sultan Orazbayev

Python library for GraphBLAS: high-performance sparse linear algebra for scalable graph analytics

bibat

Teddy Groves

An interactive template for Bayesian statistical analysis projects

taxpasta

Moritz E. Beber, Sofia Stamouli, James A. Fellows Yates

TAXonomic Profile Aggregation and STAndardisation

afscgap

A Samuel Pottinger, Giulia Zarpellon

Community contributed Python-based tools for working with public bottom trawl surveys data from the NOAA Alaska Fisheries Science Center Groundfish Assessment Program (NOAA AFSC GAP).